All modules for which code is available

  • OCT_GUI.Algorithms.AutomaticSegmentation.BruchsSegmentation
  • OCT_GUI.Algorithms.AutomaticSegmentation.BuildILMGraph
  • OCT_GUI.Algorithms.AutomaticSegmentation.BuildRPEGraph
  • OCT_GUI.Algorithms.AutomaticSegmentation.GraphCutSegmentation
  • OCT_GUI.Algorithms.AutomaticSegmentation.GraphWeights
  • OCT_GUI.Algorithms.AutomaticSegmentation.InpaintSegmentation
  • OCT_GUI.Algorithms.AutomaticSegmentation.ThreeLayerSegmentation
  • OCT_GUI.Algorithms.Flattening.VolumeFlattening
  • OCT_GUI.Algorithms.ManualCorrection.Evaluation
  • OCT_GUI.Algorithms.ManualCorrection.GraphCutBM
  • OCT_GUI.Algorithms.ManualCorrection.GraphCutILM
  • OCT_GUI.Algorithms.ManualCorrection.GraphCutRPE
  • OCT_GUI.Algorithms.RefinementRPE.BuildRPEGraph
  • OCT_GUI.Algorithms.RefinementRPE.GraphCutSegmentation
  • OCT_GUI.Algorithms.RefinementRPE.GraphWeightsRefine
  • OCT_GUI.Algorithms.RefinementRPE.InpaintSegmentation
  • OCT_GUI.Algorithms.RefinementRPE.RPERefinementAlgorithm
  • OCT_GUI.Algorithms.SlowScanRegistration.RPEBasedRegistration
  • OCT_GUI.FileHandler.ExportHandler
  • OCT_GUI.FileHandler.ImportHandler
  • OCT_GUI.FileHandler.ParameterReader
  • OCT_GUI.GUI_Classes.CanvasHeatmap
  • OCT_GUI.GUI_Classes.CanvasXY
  • OCT_GUI.GUI_Classes.CanvasXZ
  • OCT_GUI.GUI_Classes.CanvasYZ
  • OCT_GUI.GUI_Classes.FrameManualCorrection
  • OCT_GUI.GUI_Classes.Framework
  • OCT_GUI.GUI_Classes.OptionsPane
  • OCT_GUI.Tooltips.TipHandler
  • OCT_GUI.Visualization.DelineateGA
  • OCT_GUI.Visualization.Heatmap
  • OCT_GUI.Visualization.Projections

PRLEC OCT Processing Framework

Navigation

Contents:

  • PRLEC: Main function to run code
  • Framework: Core class to load initial GUI
  • BruchsSegmentation: Module for Approximating Bruch’s Membrane
  • BuildILMGraph: Module for building graph of ILM layer
  • BuildRPEGraph: Module for building graph of RPE layer
  • GraphCutSegmentation: Multithreaded Graph-Cut execution
  • GraphWeights: ILM/RPE Graph-Weight calculation for Three layer Segmentation
  • InpaintSegmentation: Module to inpaint segmentations into OCT volumes
  • ThreeLayerSegmentation: Graph-Cut Pipeline for segmenting retinal layers
  • VolumeFlattening: Module to flatten and un-flatten OCT data based on RPE
  • Evaluation: Module to calculate MSE and STDDEV of two volumes
  • GraphCutILM: Manual Refinement Graph-Cut Pipeline for Inner Limiting Membrane
  • GraphCutRPE: Manual Refinement Graph-Cut Pipeline for RPE
  • GraphCutBM: Manual Refinement Graph-Cut Pipeline for Bruch’s Membrane
  • BuildRPEGraph (Refine): Refinement of RPE segmentation (9-neighborhood)
  • GraphCutSegmentation: Multithreaded RPE refinement execution
  • GraphWeightsRefine: Module to calculate graph weights for RPE refinement
  • InpaintSegmentation (Refine): Module to inpaint segmentation
  • RPERefinementAlgorithm: Pipeline to run RPE refinement with larger neighborhood
  • RPEBasedRegistration: Module to register the volume in slow scan direction
  • ImportHandler: Module to import files
  • ExportHandler: Module to Export Files
  • ParameterReader: Module to read Parameters from text into dictionaries
  • CanvasHeatmap: Module to create heatmap canvas
  • CanvasXY: Module to create en face Canvas
  • CanvasXZ: Module to create XZ Canvas
  • CanvasYZ: Module to create yz Canvas
  • FrameManualCorrection: Module to create manual correction frame
  • OptionsPane: Module to create menu panel
  • TipHandler: Module to create tool tips
  • DelineateGA: Module to load GA lesion delineation
  • Heatmap: Module to calculate heatmap
  • Projections: Module to create projections

Related Topics

  • Documentation overview

Quick search

©2019, Daniel Stromer. | Powered by Sphinx 1.8.5 & Alabaster 0.7.12