RPERefinementAlgorithm: Pipeline to run RPE refinement with larger neighborhood

PRLEC Framework for OCT Processing and Visualization

class OCT_GUI.Algorithms.RefinementRPE.RPERefinementAlgorithm.RPERefinementClass(volume, segmentation, shiftedValues, scaling=1)[source]

Class to refine the RPE segmentation of OCT images.

Different to the three layer segmentation, this algorithm uses adapted weights and a 9-neighborhood. In addition, the area beneath Bruch’s membrane is excluded to exclude CC area and area above ILM to speed up the process.

Parameter used from Parameters text:
  • REF_RPE_BF_ENFACE: En-Face smoothing bilateral filter values
  • REF_RPE_BF_BSCAN : B-scan smoothing bilateral filter values

Methods

getResult() Return result of pipeline calculation
run() Execute Multithreaded Pipeline
runPipeline() Execute Multithreaded Pipeline
getResult()[source]

Return result of pipeline calculation

Returns:
result: ndarray

inpainted BM, RPE and ILM layer

run()[source]

Execute Multithreaded Pipeline

runPipeline()[source]

Execute Multithreaded Pipeline

Returns:
result: ndarray

inpainted BM, RPE and ILM layer